Human Resources/Payroll / Benefits

LHH

$80,000.00 - $90,000.00 per Year

San Diego, California

Permanent

Payroll / Benefits

Human Resources

Now Hiring: Payroll Manager in San Diego, CA

We are seeking a dedicated and experienced Payroll Manager to join a mission-driven non-profit organization based in El Cajon. This is a full-time, in-office position offering the opportunity to make a meaningful impact while leading payroll operations for a large and growing team.

Position Details:

Employment Type: Direct Hire
Location: El Cajon, CA (On-site)
Schedule: Monday–Friday, 7:30 AM – 4:00 PM
Salary Range: $80,000–$90,000 annually

Key Responsibilities:

Process and manage payroll for all employees, ensuring accuracy and compliance with federal, state, and local regulations
Oversee bi-weekly or semi-monthly payroll cycles for a large organization
Maintain payroll records and ensure proper documentation for audits and reporting
Ensure compliance with wage and hour laws, tax regulations, and organizational policies
Coordinate with HR and Finance to ensure accurate employee data, benefits deductions, and general ledger postings
Reconcile payroll accounts and prepare reports for internal and external stakeholders
Lead or support payroll system implementations and upgrades (e.g., Paycom, UKG, Great Plains, Sage)
Generate and analyze payroll reports using Excel and other tools to support decision-making and audits
Respond to employee inquiries regarding payroll, timekeeping, and deductions in a timely and professional manner
Collaborate with external vendors (e.g., benefits providers, tax agencies) as needed
Train and supervise payroll staff (if applicable) and ensure adherence to best practices
Support year-end processes, including W-2 preparation, tax filings, and audits

Qualifications:

Minimum of 5+ years of payroll processing experience for large organizations (200+ employees)
Bachelor’s degree preferred
Non-Profit experience preferred, but not required
Proficiency in payroll and accounting systems such as: Paycom, UKG, Great Plains, Sage
Experience with software implementation is a plus

Benefits:

Discretionary bonus
Generous paid time off
Medical, dental, and vision insurance
Retirement benefits
Voluntary life insurance
Flexible spending accounts (FSAs)
Confidential Employee Assistance Program (EAP)
And more!

If you meet the qualifications for this Payroll Manager position, please apply today!

Pay Details: $80,000.00 to $90,000.00 per year

Search managed by: Alicia Fritzal

Equal Opportunity Employer/Veterans/Disabled

To read our Candidate Privacy Information Statement, which explains how we will use your information, please navigate to https://www.lhh.com/us/en/candidate-privacy

The Company will consider qualified applicants with arrest and conviction records in accordance with federal, state, and local laws and/or security clearance requirements, including, as applicable:

The California Fair Chance Act
Los Angeles City Fair Chance Ordinance
Los Angeles County Fair Chance Ordinance for Employers
San Francisco Fair Chance Ordinance

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